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1

Unravelling post-glacial colonization through molecular techniques: new insight from estuarine invertebrates

Journal:

Journal of Biogeography

Year:

2009

Language:

english

File:

PDF, 60 KB

english, 2009

2

Low endemism, continued deep-shallow interchanges, and evidence for cosmopolitan distributions in free-living marine nematodes (order Enoplida)

Holly M Bik, W Kelley Thomas, David H Lunt, P John D Lambshead

Journal:

BMC Evolutionary Biology

Year:

2010

Language:

english

File:

PDF, 1.11 MB

english, 2010

3

Evolution of the indoor biome

Martin, Laura J., Adams, Rachel I., Bateman, Ashley, Bik, Holly M., Hawks, John, Hird, Sarah M., Hughes, David, Kembel, Steven W., Kinney, Kerry, Kolokotronis, Sergios-Orestis, Levy, Gabriel, McClain,

Journal:

Trends in Ecology & Evolution

Year:

2015

Language:

english

File:

PDF, 866 KB

english, 2015

4

Selection Is a Significant Driver of Gene Gain and Loss in the Pangenome of the Bacterial Genus Sulfurovum in Geographically Distinct Deep-Sea Hydrothermal Vents

Moulana, Alief, Anderson, Rika E., Fortunato, Caroline S., Huber, Julie A., Bik, Holly

Journal:

Year:

2020

File:

PDF, 2.38 MB

2020

5

Small worms, big ideas: evolutionary inferences from nematode DNA

Journal:

Journal of Biogeography

Year:

2010

Language:

english

File:

PDF, 81 KB

english, 2010

6

Moving towards a complete molecular framework of the Nematoda: a focus on the Enoplida and early-branching clades

Holly M Bik, PJohn D Lambshead, WKelley Thomas, David H Lunt

Journal:

BMC Evolutionary Biology

Year:

2010

Language:

english

File:

PDF, 550 KB

english, 2010

7

Metagenetic community analysis of microbial eukaryotes illuminates biogeographic patterns in deep-sea and shallow water sediments

HOLLY M. BIK, WAY SUNG, PAUL DE LEY, JAMES G. BALDWIN, JYOTSNA SHARMA, AXAYÁCATL ROCHA-OLIVARES, W. KELLEY THOMAS

Journal:

Molecular Ecology

Year:

2012

Language:

english

File:

PDF, 886 KB

english, 2012

8

Sequencing our way towards understanding global eukaryotic biodiversity

Holly M. Bik, Dorota L. Porazinska, Simon Creer, J. Gregory Caporaso, Rob Knight, W. Kelley Thomas

Journal:

Trends in Ecology & Evolution

Year:

2012

Language:

english

File:

PDF, 1.35 MB

english, 2012

9

Metagenomics will highlight and drive links to taxonomic data: reply to Murray

Bik, Holly M., Thomas, W. Kelley

Journal:

Trends in Ecology & Evolution

Year:

2012

Language:

english

File:

PDF, 144 KB

english, 2012

10

A molecular-based approach for examining responses of eukaryotes in microcosms to contaminant-spiked estuarine sediments

Chariton, Anthony A., Ho, Kay T., Proestou, Dina, Bik, Holly, Simpson, Stuart L., Portis, Lisa M., Cantwell, Mark G., Baguley, Jeffrey G., Burgess, Robert M., Pelletier, Marguerite M., Perron, Monique

Journal:

Environmental Toxicology and Chemistry

Year:

2014

Language:

english

File:

PDF, 255 KB

english, 2014

11

microBEnet: Lessons Learned from Building an Interdisciplinary Scientific Community in the Online Sphere

Bik, Holly M., Coil, David A., Eisen, Jonathan A.

Journal:

Year:

2014

Language:

english

File:

PDF, 175 KB

english, 2014

12

An Introduction to Social Media for Scientists

Bik, Holly M., Goldstein, Miriam C.

Journal:

Year:

2013

Language:

english

File:

PDF, 970 KB

english, 2013

13

Rapid decline of PCR amplification from genomic extracts of DESS-preserved, slide-mounted nematodes

Lambshead, John, Bik, Holly, Hughes, J. Alan, Hawkins, Lawrence

Journal:

Year:

2009

Language:

english

File:

PDF, 1.94 MB

english, 2009

14

Ten Simple Rules for Effective Online Outreach

Bik, Holly M., Dove, Alistair D. M., Goldstein, Miriam C., Helm, Rebecca R., MacPherson, Rick, Martini, Kim, Warneke, Alexandria, McClain, Craig, Bourne, Philip E.

Journal:

PLoS Computational Biology

Year:

2015

Language:

english

File:

PDF, 115 KB

english, 2015

15

Microbiota of the indoor environment: a meta-analysis

Adams, Rachel I., Bateman, Ashley C., Bik, Holly M., Meadow, James F.

Journal:

Year:

2015

Language:

english

File:

PDF, 7.43 MB

english, 2015

16

Meeting Report: Fungal ITS Workshop (October 2012)

Bates, Scott T., Ahrendt, Steven, Bik, Holly M., Bruns, Thomas D., Caporaso, J. Gregory, Cole, James, Dwan, Michael, Fierer, Noah, Gu, Dai, Houston, Shawn, Knight, Rob, Leff, Jon, Lewis, Christopher,

Journal:

Standards in Genomic Sciences

Year:

2013

Language:

english

File:

PDF, 215 KB

english, 2013

17

RCN4GSC Workshop Report: Managing Data at the Interface of Biodiversity and (Meta)Genomics, March 2011

Robbins, Robert J., Amaral-Zettler, Linda, Bik, Holly, Blum, Stan, Edwards, James, Field, Dawn, Garrity, George, Gilbert, Jack A., Kottmann, Renzo, Krishtalka, Leonard, Lapp, Hilmar, Lawrence, Carolyn

Journal:

Standards in Genomic Sciences

Year:

2012

Language:

english

File:

PDF, 217 KB

english, 2012

18

The ecologist's field guide to sequence-based identification of biodiversity

Creer, Simon, Deiner, Kristy, Frey, Serita, Porazinska, Dorota, Taberlet, Pierre, Thomas, W. Kelley, Potter, Caitlin, Bik, Holly M., Freckleton, Robert

Journal:

Methods in Ecology and Evolution

Year:

2016

Language:

english

File:

PDF, 1.64 MB

english, 2016

19

Microbial Community Patterns Associated with Automated Teller Machine Keypads in New York City

Bik, Holly M., Maritz, Julia M., Luong, Albert, Shin, Hakdong, Dominguez-Bello, Maria Gloria, Carlton, Jane M., Mattes, Timothy E.

Journal:

Year:

2016

Language:

english

File:

PDF, 4.48 MB

english, 2016

20

Deciphering Diversity and Ecological Function From Marine Metagenomes

Journal:

Biological Bulletin

Year:

2014

Language:

english

File:

PDF, 84 KB

english, 2014

21

Meta-analysis To Define a Core Microbiota in the Swine Gut

Holman, Devin B., Brunelle, Brian W., Trachsel, Julian, Allen, Heather K., Bik, Holly

Journal:

Year:

2017

Language:

english

File:

PDF, 1.71 MB

english, 2017

22

Spatial and temporal variation of intertidal nematodes in the northern Gulf of Mexico after the Deepwater Horizon oil spill

Brannock, Pamela M., Sharma, Jyotsna, Bik, Holly M., Thomas, W. Kelley, Halanych, Kenneth M.

Journal:

Marine Environmental Research

Year:

2017

Language:

english

File:

PDF, 2.18 MB

english, 2017

23

Transcriptome Sequencing Reveals Novel Candidate Genes for Cardinium hertigii -Caused Cytoplasmic Incompatibility and Host-Cell Interaction

Mann, Evelyne, Stouthamer, Corinne M., Kelly, Suzanne E., Dzieciol, Monika, Hunter, Martha S., Schmitz-Esser, Stephan, Bik, Holly

Journal:

Year:

2017

Language:

english

File:

PDF, 1007 KB

english, 2017

24

Nematode-associated microbial taxa do not correlate with host phylogeny, geographic region or feeding morphology in marine sediment habitats

Schuelke, Taruna, Pereira, Tiago José, Hardy, Sarah M., Bik, Holly M.

Journal:

Molecular Ecology

Year:

2018

Language:

english

File:

PDF, 1.74 MB

english, 2018

25

Let’s rise up to unite taxonomy and technology

Journal:

Year:

2017

Language:

english

File:

PDF, 1.49 MB

english, 2017

26

Sample size effects on the assessment of eukaryotic diversity and community structure in aquatic sediments using high-throughput sequencing

Nascimento, Francisco J. A., Lallias, Delphine, Bik, Holly M., Creer, Simon

Journal:

Scientific Reports

Year:

2018

File:

PDF, 2.00 MB

2018

27

Sample size effects on the assessment of eukaryotic diversity and community structure in aquatic sediments using high-throughput sequencing

Nascimento, Francisco J. A., Lallias, Delphine, Bik, Holly M., Creer, Simon

Journal:

Scientific Reports

Year:

2018

Language:

english

File:

PDF, 2.00 MB

english, 2018

28

Is Host Filtering the Main Driver of Phylosymbiosis across the Tree of Life?

Mazel, Florent, Davis, Katherine M., Loudon, Andrew, Kwong, Waldan K., Groussin, Mathieu, Parfrey, Laura Wegener, Bik, Holly

Journal:

Year:

2018

File:

PDF, 756 KB

2018

29

Helminth-Based Product and the Microbiome of Mice with Lupus

Neuman, Hadar, Mor, Hadar, Bashi, Tomer, Givol, Or, Watad, Abdulla, Shemer, Asaf, Volkov, Alexander, Barshack, Iris, Fridkin, Mati, Blank, Miri, Shoenfeld, Yehuda, Koren, Omry, Bik, Holly

Journal:

Year:

2019

File:

PDF, 1.81 MB

2019

30

Helminth-Based Product and the Microbiome of Mice with Lupus

Neuman, Hadar, Mor, Hadar, Bashi, Tomer, Givol, Or, Watad, Abdulla, Shemer, Asaf, Volkov, Alexander, Barshack, Iris, Fridkin, Mati, Blank, Miri, Shoenfeld, Yehuda, Koren, Omry, Bik, Holly

Journal:

Year:

2019

Language:

english

File:

PDF, 1.81 MB

english, 2019

31

Microbial Community Succession and Nutrient Cycling Responses following Perturbations of Experimental Saltwater Aquaria

Bik, Holly M., Alexiev, Alexandra, Aulakh, Sabreen K., Bharadwaj, Lakshmi, Flanagan, Jennifer, Haggerty, John M., Hird, Sarah M., Jospin, Guillaume, Lang, Jenna M., Sauder, Laura A., Neufeld, Josh D.,

Journal:

Year:

2019

File:

PDF, 4.53 MB

2019

32

Altered Bacterial-Fungal Interkingdom Networks in the Guts of Ankylosing Spondylitis Patients

Li, Ming, Dai, Bingbing, Tang, Yawei, Lei, Lei, Li, Ningning, Liu, Chang, Ge, Teng, Zhang, Lilong, Xu, Yao, Hu, Yuqi, Li, Pengfei, Zhang, Yan, Yuan, Jieli, Li, Xia, Bik, Holly

Journal:

Year:

2019

Language:

english

File:

PDF, 2.65 MB

english, 2019

33

DNA metabarcoding—Need for robust experimental designs to draw sound ecological conclusions

Zinger, Lucie, Bonin, Aurélie, Alsos, Inger G., Bálint, Miklós, Bik, Holly, Boyer, Frédéric, Chariton, Anthony A., Creer, Simon, Coissac, Eric, Deagle, Bruce E., De Barba, Marta, Dickie, Ian A., Dumbr

Journal:

Molecular Ecology

Year:

2019

Language:

english

File:

PDF, 666 KB

english, 2019

34

DNA metabarcoding—Need for robust experimental designs to draw sound ecological conclusions

Zinger, Lucie, Bonin, Aurélie, Alsos, Inger G., Bálint, Miklós, Bik, Holly, Boyer, Frédéric, Chariton, Anthony A., Creer, Simon, Coissac, Eric, Deagle, Bruce E., De Barba, Marta, Dickie, Ian A., Dumbr

Journal:

Molecular Ecology

Year:

2019

File:

PDF, 666 KB

2019

35

Microfluidics-Based Enrichment and Whole-Genome Amplification Enable Strain-Level Resolution for Airway Metagenomics

Shi, Xing, Shao, Changjun, Luo, Chunxiong, Chu, Yanan, Wang, Jian, Meng, Qingren, Yu, Jun, Gao, Zhancheng, Kang, Yu, Bik, Holly

Journal:

Year:

2019

Language:

english

File:

PDF, 1.93 MB

english, 2019

36

Microfluidics-Based Enrichment and Whole-Genome Amplification Enable Strain-Level Resolution for Airway Metagenomics

Shi, Xing, Shao, Changjun, Luo, Chunxiong, Chu, Yanan, Wang, Jian, Meng, Qingren, Yu, Jun, Gao, Zhancheng, Kang, Yu, Bik, Holly

Journal:

Year:

2019

File:

PDF, 1.93 MB

2019

37

Microbial Metazoa Are Microbes Too

Journal:

Year:

2019

Language:

english

File:

PDF, 873 KB

english, 2019

38

Extensive Thioautotrophic Gill Endosymbiont Diversity within a Single Ctena orbiculata (Bivalvia: Lucinidae) Population and Implications for Defining Host-Symbiont Specificity and Species Recognition

Lim, Shen Jean, Alexander, Louie, Engel, Annette Summers, Paterson, Audrey T., Anderson, Laurie C., Campbell, Barbara J., Bik, Holly

Journal:

Year:

2019

Language:

english

File:

PDF, 3.69 MB

english, 2019

39

Extensive Thioautotrophic Gill Endosymbiont Diversity within a Single Ctena orbiculata (Bivalvia: Lucinidae) Population and Implications for Defining Host-Symbiont Specificity and Species Recognition

Lim, Shen Jean, Alexander, Louie, Engel, Annette Summers, Paterson, Audrey T., Anderson, Laurie C., Campbell, Barbara J., Bik, Holly

Journal:

Year:

2019

File:

PDF, 3.69 MB

2019

40

Widespread prevalence but contrasting patterns of intragenomic rRNA polymorphisms in nematodes: Implications for phylogeny, species delimitation, and life history inference

Xue, Qing, Bik, Holly, Yergaliyev, Timur M., Gu, Jianfeng, Fonderie, Pamela, Brown‐Miyara, Sigal, Szitenberg, Amir, Bert, Wim

Journal:

Molecular Ecology Resources

Year:

2019

Language:

english

File:

PDF, 22.08 MB

english, 2019

41

Widespread prevalence but contrasting patterns of intragenomic rRNA polymorphisms in nematodes: Implications for phylogeny, species delimitation, and life history inference

Xue, Qing, Bik, Holly, Yergaliyev, Timur M., Gu, Jianfeng, Fonderie, Pamela, Brown‐Miyara, Sigal, Szitenberg, Amir, Bert, Wim

Journal:

Molecular Ecology Resources

Year:

2019

File:

PDF, 22.08 MB

2019

42

The impact of intragenomic rRNA variation on metabarcodingâderived diversity estimates: A case study from marine nematodes

Pereira, Tiago JosÃ©, De Santiago, Alejandro, Schuelke, Taruna, Hardy, Sarah M., Bik, Holly M.

Journal:

Environmental DNA

Year:

2020

File:

PDF, 2.04 MB

2020

43

The Effects of Crude Oil and Dispersant on the Larval Sponge Holobiont

Luter, Heidi M., Whalan, Steve, Andreakis, Nikos, Abdul Wahab, Muhammad, BottÃ©, Emmanuelle S., Negri, Andrew P., Webster, Nicole S., Bik, Holly

Journal:

Year:

2019

File:

PDF, 1.66 MB

2019

44

Antarctic ecosystem responses following iceâshelf collapse and iceberg calving: Science review and future research

Ingels, Jeroen, Aronson, Richard B., Smith, Craig R., Baco, Amy, Bik, Holly M., Blake, James A., Brandt, Angelika, Cape, Mattias, Demaster, David, Dolan, Emily, Domack, Eugene, Fire, Spencer, Geisz, H

Journal:

Wiley Interdisciplinary Reviews: Climate Change

Year:

2020

File:

PDF, 4.87 MB

2020

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